StrokeSeg Documentation

Warning

This application is for research purposes only!

Contents:

• User Guide
  • Introduction
  • Graphical Interface
  • Command Line Interface

Software description at [1].

Model description at [2].

API Documentation

• Python API Documentation

• C++ Bootstrapper Documentation

Repositories

Click on each circle intersection to reach the corresponding repository. Or simply access :

• StrokeSeg Lab (Scientific code)

• StrokeSeg App (Compiled binaries, installer)

Model Checkpoints are available here :

• T1-w only: Zenodo

• T1-w and FLAIR fine-tuned: Soon

References

[1]

Yann Kerverdo, Florent Leray, Youwan Mahé, Stéphanie Leplaideur, and Francesca Galassi. Stroke lesion segmentation in clinical workflows: a modular, lightweight, and deployment-ready tool. 2025. URL: https://arxiv.org/abs/2510.24378, arXiv:2510.24378.

[2]

Alessandro Di Matteo, Youwan Mahé, Stéphanie Leplaideur, Isabelle Bonan, Elise Bannier, and Francesca Galassi. Deep learning and multi-modal mri for the segmentation of sub-acute and chronic stroke lesions. Pattern Recognition Letters, 199:225–231, 2026. URL: https://www.sciencedirect.com/science/article/pii/S0167865525003745, doi:https://doi.org/10.1016/j.patrec.2025.11.017.